WEBVTT 00:00:00.850 --> 00:00:02.753 So, has everybody heard of CRISPR? 00:00:03.883 --> 00:00:06.485 I would be shocked if you haven't. NOTE Paragraph 00:00:06.509 --> 00:00:09.711 This is a technology -- it's for genome editing -- 00:00:09.735 --> 00:00:12.569 and it's so versatile and so controversial 00:00:12.593 --> 00:00:15.834 that it's sparking all sorts of really interesting conversations. 00:00:16.631 --> 00:00:18.694 Should we bring back the woolly mammoth? 00:00:19.281 --> 00:00:21.575 Should we edit a human embryo? 00:00:22.041 --> 00:00:24.163 And my personal favorite: 00:00:24.997 --> 00:00:28.648 How can we justify wiping out an entire species 00:00:28.672 --> 00:00:31.116 that we consider harmful to humans 00:00:31.140 --> 00:00:32.442 off the face of the Earth, 00:00:32.466 --> 00:00:33.983 using this technology? 00:00:35.165 --> 00:00:38.448 This type of science is moving much faster 00:00:38.472 --> 00:00:41.316 than the regulatory mechanisms that govern it. 00:00:41.340 --> 00:00:43.407 And so, for the past six years, 00:00:43.431 --> 00:00:45.376 I've made it my personal mission 00:00:45.863 --> 00:00:48.873 to make sure that as many people as possible understand 00:00:48.897 --> 00:00:51.997 these types of technologies and their implications. NOTE Paragraph 00:00:52.021 --> 00:00:56.550 Now, CRISPR has been the subject of a huge media hype, 00:00:57.089 --> 00:01:01.448 and the words that are used most often are "easy" and "cheap." 00:01:02.337 --> 00:01:05.476 So what I want to do is drill down a little bit deeper 00:01:05.500 --> 00:01:09.684 and look into some of the myths and the realities around CRISPR. NOTE Paragraph 00:01:10.954 --> 00:01:12.904 If you're trying to CRISPR a genome, 00:01:13.594 --> 00:01:16.194 the first thing that you have to do is damage the DNA. 00:01:17.098 --> 00:01:20.140 The damage comes in the form of a double-strand break 00:01:20.164 --> 00:01:21.728 through the double helix. 00:01:21.752 --> 00:01:24.504 And then the cellular repair processes kick in, 00:01:25.088 --> 00:01:27.727 and then we convince those repair processes 00:01:27.751 --> 00:01:29.627 to make the edit that we want, 00:01:30.054 --> 00:01:31.596 and not a natural edit. 00:01:31.620 --> 00:01:32.865 That's how it works. 00:01:33.929 --> 00:01:35.652 It's a two-part system. 00:01:35.676 --> 00:01:39.047 You've got a Cas9 protein and something called a guide RNA. 00:01:39.071 --> 00:01:41.533 I like to think of it as a guided missile. 00:01:41.557 --> 00:01:44.203 So the Cas9 -- I love to anthropomorphize -- 00:01:44.227 --> 00:01:47.457 so the Cas9 is kind of this Pac-Man thing 00:01:47.481 --> 00:01:49.026 that wants to chew DNA, 00:01:49.050 --> 00:01:53.206 and the guide RNA is the leash that's keeping it out of the genome 00:01:53.230 --> 00:01:56.079 until it finds the exact spot where it matches. 00:01:56.912 --> 00:01:59.806 And the combination of those two is called CRISPR. 00:01:59.830 --> 00:02:01.398 It's a system that we stole 00:02:01.422 --> 00:02:04.316 from an ancient, ancient bacterial immune system. NOTE Paragraph 00:02:05.469 --> 00:02:09.209 The part that's amazing about it is that the guide RNA, 00:02:10.041 --> 00:02:11.932 only 20 letters of it, 00:02:11.956 --> 00:02:13.594 are what target the system. 00:02:14.570 --> 00:02:16.713 This is really easy to design, 00:02:16.737 --> 00:02:18.556 and it's really cheap to buy. 00:02:18.985 --> 00:02:22.990 So that's the part that is modular in the system; 00:02:23.014 --> 00:02:24.812 everything else stays the same. 00:02:25.481 --> 00:02:28.912 This makes it a remarkably easy and powerful system to use. NOTE Paragraph 00:02:30.047 --> 00:02:34.287 The guide RNA and the Cas9 protein complex together 00:02:34.311 --> 00:02:36.243 go bouncing along the genome, 00:02:36.267 --> 00:02:39.760 and when they find a spot where the guide RNA matches, 00:02:39.784 --> 00:02:42.639 then it inserts between the two strands of the double helix, 00:02:42.663 --> 00:02:44.231 it rips them apart, 00:02:44.692 --> 00:02:47.380 that triggers the Cas9 protein to cut, 00:02:47.962 --> 00:02:49.381 and all of a sudden, 00:02:49.816 --> 00:02:51.716 you've got a cell that's in total panic 00:02:51.740 --> 00:02:54.365 because now it's got a piece of DNA that's broken. 00:02:55.000 --> 00:02:56.296 What does it do? 00:02:56.320 --> 00:02:58.514 It calls its first responders. 00:02:58.959 --> 00:03:01.581 There are two major repair pathways. 00:03:01.605 --> 00:03:06.674 The first just takes the DNA and shoves the two pieces back together. 00:03:06.698 --> 00:03:08.796 This isn't a very efficient system, 00:03:08.820 --> 00:03:11.549 because what happens is sometimes a base drops out 00:03:11.573 --> 00:03:13.000 or a base is added. 00:03:13.024 --> 00:03:16.817 It's an OK way to maybe, like, knock out a gene, 00:03:16.841 --> 00:03:20.074 but it's not the way that we really want to do genome editing. NOTE Paragraph 00:03:20.098 --> 00:03:22.993 The second repair pathway is a lot more interesting. 00:03:23.017 --> 00:03:24.653 In this repair pathway, 00:03:24.677 --> 00:03:27.358 it takes a homologous piece of DNA. 00:03:27.382 --> 00:03:30.022 And now mind you, in a diploid organism like people, 00:03:30.046 --> 00:03:34.294 we've got one copy of our genome from our mom and one from our dad, 00:03:34.318 --> 00:03:35.593 so if one gets damaged, 00:03:35.617 --> 00:03:38.012 it can use the other chromosome to repair it. 00:03:38.036 --> 00:03:39.669 So that's where this comes from. 00:03:40.518 --> 00:03:41.982 The repair is made, 00:03:42.006 --> 00:03:43.957 and now the genome is safe again. NOTE Paragraph 00:03:44.616 --> 00:03:46.139 The way that we can hijack this 00:03:46.497 --> 00:03:50.205 is we can feed it a false piece of DNA, 00:03:50.229 --> 00:03:52.373 a piece that has homology on both ends 00:03:52.397 --> 00:03:54.096 but is different in the middle. 00:03:54.120 --> 00:03:56.587 So now, you can put whatever you want in the center 00:03:56.611 --> 00:03:58.126 and the cell gets fooled. 00:03:58.150 --> 00:04:00.269 So you can change a letter, 00:04:00.293 --> 00:04:01.558 you can take letters out, 00:04:01.582 --> 00:04:04.506 but most importantly, you can stuff new DNA in, 00:04:04.530 --> 00:04:06.279 kind of like a Trojan horse. NOTE Paragraph 00:04:07.089 --> 00:04:09.274 CRISPR is going to be amazing, 00:04:09.298 --> 00:04:12.916 in terms of the number of different scientific advances 00:04:12.940 --> 00:04:14.597 that it's going to catalyze. 00:04:14.621 --> 00:04:17.842 The thing that's special about it is this modular targeting system. 00:04:17.866 --> 00:04:21.633 I mean, we've been shoving DNA into organisms for years, right? 00:04:21.657 --> 00:04:23.784 But because of the modular targeting system, 00:04:23.808 --> 00:04:26.233 we can actually put it exactly where we want it. NOTE Paragraph 00:04:27.423 --> 00:04:33.092 The thing is that there's a lot of talk about it being cheap 00:04:33.116 --> 00:04:34.858 and it being easy, 00:04:34.882 --> 00:04:37.694 and I run a community lab. 00:04:38.242 --> 00:04:41.798 I'm starting to get emails from people that say stuff like, NOTE Paragraph 00:04:41.822 --> 00:04:44.219 "Hey, can I come to your open night 00:04:44.243 --> 00:04:47.860 and, like, maybe use CRISPR and engineer my genome?" NOTE Paragraph 00:04:47.884 --> 00:04:48.994 (Laugher) NOTE Paragraph 00:04:49.018 --> 00:04:50.519 Like, seriously. NOTE Paragraph 00:04:51.376 --> 00:04:53.179 I'm, "No, you can't." NOTE Paragraph 00:04:53.203 --> 00:04:54.213 (Laughter) NOTE Paragraph 00:04:54.237 --> 00:04:56.592 "But I've heard it's cheap. I've heard it's easy." NOTE Paragraph 00:04:56.616 --> 00:04:58.799 We're going to explore that a little bit. NOTE Paragraph 00:04:58.823 --> 00:05:00.772 So, how cheap is it? 00:05:00.796 --> 00:05:03.206 Yeah, it is cheap in comparison. 00:05:03.665 --> 00:05:07.284 It's going to take the cost of the average materials for an experiment 00:05:07.308 --> 00:05:09.840 from thousands of dollars to hundreds of dollars, 00:05:09.864 --> 00:05:11.800 and it cuts the time a lot, too. 00:05:11.824 --> 00:05:13.904 It can cut it from weeks to days. 00:05:14.246 --> 00:05:15.738 That's great. 00:05:15.762 --> 00:05:18.452 You still need a professional lab to do the work in; 00:05:18.476 --> 00:05:21.988 you're not going to do anything meaningful outside of a professional lab. 00:05:22.012 --> 00:05:24.016 I mean, don't listen to anyone who says 00:05:24.040 --> 00:05:26.771 you can do this sort of stuff on your kitchen table. 00:05:27.421 --> 00:05:31.929 It's really not easy to do this kind of work. 00:05:31.953 --> 00:05:34.261 Not to mention, there's a patent battle going on, 00:05:34.285 --> 00:05:36.111 so even if you do invent something, 00:05:36.135 --> 00:05:42.771 the Broad Institute and UC Berkeley are in this incredible patent battle. 00:05:42.795 --> 00:05:45.183 It's really fascinating to watch it happen, 00:05:45.207 --> 00:05:48.455 because they're accusing each other of fraudulent claims 00:05:48.479 --> 00:05:50.210 and then they've got people saying, 00:05:50.234 --> 00:05:53.018 "Oh, well, I signed my notebook here or there." 00:05:53.042 --> 00:05:55.143 This isn't going to be settled for years. 00:05:55.167 --> 00:05:56.327 And when it is, 00:05:56.351 --> 00:05:59.636 you can bet you're going to pay someone a really hefty licensing fee 00:05:59.660 --> 00:06:01.009 in order to use this stuff. 00:06:01.343 --> 00:06:03.124 So, is it really cheap? 00:06:03.148 --> 00:06:08.347 Well, it's cheap if you're doing basic research and you've got a lab. NOTE Paragraph 00:06:09.220 --> 00:06:11.496 How about easy? Let's look at that claim. 00:06:12.417 --> 00:06:14.905 The devil is always in the details. 00:06:15.881 --> 00:06:19.012 We don't really know that much about cells. 00:06:19.036 --> 00:06:20.706 They're still kind of black boxes. 00:06:20.730 --> 00:06:25.590 For example, we don't know why some guide RNAs work really well 00:06:25.614 --> 00:06:27.677 and some guide RNAs don't. 00:06:27.701 --> 00:06:31.169 We don't know why some cells want to do one repair pathway 00:06:31.193 --> 00:06:33.651 and some cells would rather do the other. 00:06:34.270 --> 00:06:35.554 And besides that, 00:06:35.578 --> 00:06:38.447 there's the whole problem of getting the system into the cell 00:06:38.471 --> 00:06:39.735 in the first place. 00:06:39.759 --> 00:06:41.761 In a petri dish, that's not that hard, 00:06:41.785 --> 00:06:44.230 but if you're trying to do it on a whole organism, 00:06:44.254 --> 00:06:45.797 it gets really tricky. 00:06:46.224 --> 00:06:49.410 It's OK if you use something like blood or bone marrow -- 00:06:49.434 --> 00:06:51.661 those are the targets of a lot of research now. NOTE Paragraph 00:06:51.685 --> 00:06:53.936 There was a great story of some little girl 00:06:53.960 --> 00:06:55.612 who they saved from leukemia 00:06:55.636 --> 00:06:58.310 by taking the blood out, editing it, and putting it back 00:06:58.334 --> 00:07:00.383 with a precursor of CRISPR. 00:07:00.869 --> 00:07:03.665 And this is a line of research that people are going to do. 00:07:03.689 --> 00:07:06.242 But right now, if you want to get into the whole body, 00:07:06.266 --> 00:07:08.410 you're probably going to have to use a virus. 00:07:08.434 --> 00:07:10.807 So you take the virus, you put the CRISPR into it, 00:07:10.831 --> 00:07:12.537 you let the virus infect the cell. 00:07:12.561 --> 00:07:14.704 But now you've got this virus in there, 00:07:14.728 --> 00:07:17.416 and we don't know what the long-term effects of that are. 00:07:17.440 --> 00:07:19.708 Plus, CRISPR has some off-target effects, 00:07:19.732 --> 00:07:22.693 a very small percentage, but they're still there. 00:07:22.717 --> 00:07:25.515 What's going to happen over time with that? 00:07:26.039 --> 00:07:28.251 These are not trivial questions, 00:07:28.275 --> 00:07:30.915 and there are scientists that are trying to solve them, 00:07:30.939 --> 00:07:33.225 and they will eventually, hopefully, be solved. 00:07:33.249 --> 00:07:36.883 But it ain't plug-and-play, not by a long shot. 00:07:36.907 --> 00:07:38.666 So: Is it really easy? 00:07:39.032 --> 00:07:43.365 Well, if you spend a few years working it out in your particular system, 00:07:43.389 --> 00:07:44.814 yes, it is. NOTE Paragraph 00:07:45.426 --> 00:07:47.510 Now the other thing is, 00:07:47.534 --> 00:07:53.893 we don't really know that much about how to make a particular thing happen 00:07:53.917 --> 00:07:56.822 by changing particular spots in the genome. 00:07:57.306 --> 00:07:59.473 We're a long way away from figuring out 00:07:59.497 --> 00:08:01.866 how to give a pig wings, for example. 00:08:02.364 --> 00:08:05.228 Or even an extra leg -- I'd settle for an extra leg. 00:08:05.252 --> 00:08:06.898 That would be kind of cool, right? 00:08:06.922 --> 00:08:08.458 But what is happening 00:08:08.482 --> 00:08:12.832 is that CRISPR is being used by thousands and thousands of scientists 00:08:12.856 --> 00:08:15.228 to do really, really important work, 00:08:15.252 --> 00:08:20.696 like making better models of diseases in animals, for example, 00:08:20.720 --> 00:08:25.702 or for taking pathways that produce valuable chemicals, 00:08:25.726 --> 00:08:29.608 and getting them into industrial production and fermentation vats, 00:08:30.021 --> 00:08:33.482 or even doing really basic research on what genes do. NOTE Paragraph 00:08:34.022 --> 00:08:36.951 This is the story of CRISPR we should be telling, 00:08:36.975 --> 00:08:40.439 and I don't like it that the flashier aspects of it 00:08:40.463 --> 00:08:42.219 are drowning all of this out. 00:08:42.243 --> 00:08:46.817 Lots of scientists did a lot of work to make CRISPR happen, 00:08:46.841 --> 00:08:48.460 and what's interesting to me 00:08:48.484 --> 00:08:52.994 is that these scientists are being supported by our society. 00:08:53.423 --> 00:08:54.582 Think about it. 00:08:54.606 --> 00:08:58.625 We've got an infrastructure that allows a certain percentage of people 00:08:58.983 --> 00:09:02.292 to spend all their time doing research. 00:09:02.984 --> 00:09:06.355 That makes us all the inventors of CRISPR, 00:09:06.998 --> 00:09:11.466 and I would say that makes us all the shepherds of CRISPR. 00:09:11.490 --> 00:09:13.297 We all have a responsibility. 00:09:13.749 --> 00:09:17.705 So I would urge you to really learn about these types of technologies, 00:09:18.010 --> 00:09:20.029 because, really, only in that way 00:09:20.415 --> 00:09:24.767 are we going to be able to guide the development of these technologies, 00:09:24.791 --> 00:09:26.723 the use of these technologies 00:09:26.747 --> 00:09:30.502 and make sure that, in the end, it's a positive outcome -- 00:09:31.034 --> 00:09:34.166 for both the planet and for us. NOTE Paragraph 00:09:34.698 --> 00:09:35.890 Thanks. NOTE Paragraph 00:09:35.914 --> 00:09:39.816 (Applause)