1 99:59:59,999 --> 99:59:59,999 1 00:00:04,490 --> 00:00:05,000 Hello. 2 99:59:59,999 --> 99:59:59,999 2 00:00:05,000 --> 00:00:16,640 And this video, I'm going to show you how to use Onex to run Jupiter connect to Jupiter Notebook's and work on things such as our class assignments. 3 99:59:59,999 --> 99:59:59,999 3 00:00:16,640 --> 00:00:24,230 I'm going to be demonstrating this using associates from Mobile X term, since I'm going to be using the command line MSH tools. 4 99:59:59,999 --> 99:59:59,999 4 00:00:24,230 --> 00:00:31,790 The same things apply when you are working from Linux and Mac. 5 99:59:59,999 --> 99:59:59,999 5 00:00:31,790 --> 00:00:37,820 So usually when you use Malek's term, you'd be used to creating a new LSH session. 6 99:59:59,999 --> 99:59:59,999 6 00:00:37,820 --> 00:00:44,450 But because of the firewall that keeps you from directly accessing any onyx nodes other than the head node, 7 99:59:59,999 --> 99:59:59,999 7 00:00:44,450 --> 00:00:51,620 we're going to use the SSA command line tool from a local terminal. So I'm going to click start local terminal to get a terminal. 8 99:59:59,999 --> 99:59:59,999 8 00:00:51,620 --> 00:00:59,180 And now I'm going to connect to the Onyx head node SSA H Onex Stop Boise State Radio. 9 99:59:59,999 --> 99:59:59,999 9 00:00:59,180 --> 00:01:06,780 You may need to specify your user name at the beginning. And that will give it a user name to connect with. 10 99:59:59,999 --> 99:59:59,999 10 00:01:06,780 --> 00:01:15,110 So I'm going to make this connection to the Onyx head note and ask you for a password. 11 99:59:59,999 --> 99:59:59,999 11 00:01:15,110 --> 00:01:19,730 And I am not going to have MOBA X term, remember my house words. 12 99:59:59,999 --> 99:59:59,999 12 00:01:19,730 --> 00:01:24,500 So I'm now logged into Onyx. 13 99:59:59,999 --> 99:59:59,999 13 00:01:24,500 --> 00:01:35,000 We do install Mini Konda or Anakonda due to Onyx network file systems setup, the full Anaconda installation doesn't work very well. 14 99:59:59,999 --> 99:59:59,999 14 00:01:35,000 --> 00:01:40,580 So we're going to use mini Condah. And I am going to go down to the Linux installer. 15 99:59:59,999 --> 99:59:59,999 15 00:01:40,580 --> 00:01:45,230 I'm going to right click the Python or the Linux 64 bit version, 16 99:59:59,999 --> 99:59:59,999 16 00:01:45,230 --> 00:01:50,570 get its like address and then I'm going to use w get to download it onto Onyx so w get. 17 99:59:59,999 --> 99:59:59,999 17 00:01:50,570 --> 00:01:57,110 And then I am going to paste the you are all in there and it's going to fetch it. 18 99:59:59,999 --> 99:59:59,999 18 00:01:57,110 --> 00:02:06,620 So now we've downloaded a mini Condah and now and then we can run the installer with slash been slash Basche many Konda three. 19 99:59:59,999 --> 99:59:59,999 19 00:02:06,620 --> 00:02:18,580 It asked us to accept the license terms. The default installation location is OK. 20 99:59:59,999 --> 99:59:59,999 20 00:02:18,580 --> 00:02:22,630 Now that it's done with the main installer, it asks if I want to initialize it, I'm going to say yes. 21 99:59:59,999 --> 99:59:59,999 21 00:02:22,630 --> 00:02:27,250 And this is going to set up my shell configuration to automatically use in a KONDA. 22 99:59:59,999 --> 99:59:59,999 22 00:02:27,250 --> 00:02:31,840 And then I need to, as it notes there, I need to close and reopen my current shell. 23 99:59:59,999 --> 99:59:59,999 23 00:02:31,840 --> 00:02:36,640 So I need to exit and then I need to. 24 99:59:59,999 --> 99:59:59,999 24 00:02:36,640 --> 00:02:47,800 And then I can connect again. But we don't want to do our actual computations on the Onyx head note because it's the node everybody logs into. 25 99:59:59,999 --> 99:59:59,999 25 00:02:47,800 --> 00:02:51,940 If everyone uses it for computations, then we're going. It's going to get overloaded. 26 99:59:59,999 --> 99:59:59,999 26 00:02:51,940 --> 00:02:57,650 So we want to actually do our work on one of the other onyx nodes. 27 99:59:59,999 --> 99:59:59,999 27 00:02:57,650 --> 00:03:06,410 So we don't actually want to log in to Onyx directly to do most of our work because it's the central node. 28 99:59:59,999 --> 99:59:59,999 28 00:03:06,410 --> 00:03:13,160 It's great for file transfer, for doing our installation, for working with a few things, but for doing our actual computations. 29 99:59:59,999 --> 99:59:59,999 29 00:03:13,160 --> 00:03:22,130 If everyone uses it, it's going to be overloaded. So we want to work on one of the actual individual onyx nodes, which are computers in the S lab. 30 99:59:59,999 --> 99:59:59,999 30 00:03:22,130 --> 00:03:25,580 D, though, are behind the firewall. 31 99:59:59,999 --> 99:59:59,999 31 00:03:25,580 --> 00:03:33,620 Onyx itself is the head notice available from outside the network, but the internal nodes are only available from inside the Boise State network. 32 99:59:59,999 --> 99:59:59,999 32 00:03:33,620 --> 00:03:39,080 So we need to go through a jump post if we're not at Boise State or on the VPN. 33 99:59:59,999 --> 99:59:59,999 33 00:03:39,080 --> 00:03:44,900 This is why we're using the command line tools and X terminals that of its direct DSH connections. 34 99:59:59,999 --> 99:59:59,999 34 00:03:44,900 --> 00:03:50,660 This also works the command line SSA each client is the same as the one that's on Linux and on Mac. 35 99:59:59,999 --> 99:59:59,999 35 00:03:50,660 --> 00:04:00,330 So I've already created my configuration. So we have the directory, that DOT SSA directory that has configuration. 36 99:59:59,999 --> 99:59:59,999 36 00:04:00,330 --> 00:04:11,130 I've created a SSA config directory that has the settings to use the head node as a jump post, this proxy jump setting to get into other nodes. 37 99:59:59,999 --> 99:59:59,999 37 00:04:11,130 --> 00:04:18,390 You'll find that the configuration settings you need to put in here in the instructions online. 38 99:59:59,999 --> 99:59:59,999 38 00:04:18,390 --> 00:04:26,530 I'm going to connect now directly to Onyx Node zero three. 39 99:59:59,999 --> 99:59:59,999 39 00:04:26,530 --> 00:04:34,990 I'm not providing my user name right now because my SSA age configuration tells LSH which username to use. 40 99:59:59,999 --> 99:59:59,999 40 00:04:34,990 --> 00:04:40,370 And note that it asks me for my password twice, once for the Onyx head node to make the proxy connection. 41 99:59:59,999 --> 99:59:59,999 41 00:04:40,370 --> 00:04:50,060 And then again for the onyx node itself. So we see on the left of of my terminal prompt that the bass in parentheses, 42 99:59:59,999 --> 99:59:59,999 42 00:04:50,060 --> 00:04:56,960 and that is Konda telling me that the bass environment is activated and ready to use. 43 99:59:59,999 --> 99:59:59,999 43 00:04:56,960 --> 00:05:04,340 Now, before we start using a node, we want to make sure that it's not actively and used by anyone else, especially for significant processing. 44 99:59:59,999 --> 99:59:59,999 44 00:05:04,340 --> 00:05:11,750 So I'm going to do that with a couple of commands. First, uptime is going to print out the current load level of the system. 45 99:59:59,999 --> 99:59:59,999 45 00:05:11,750 --> 00:05:15,860 And it has one user, me and a load average of approximately zero. 46 99:59:59,999 --> 99:59:59,999 46 00:05:15,860 --> 00:05:22,940 This means the system is not very active right now. I can also type W to see who is currently logged into the computer. 47 99:59:59,999 --> 99:59:59,999 47 00:05:22,940 --> 00:05:30,740 And it's just me. So this node is good to use. So I can use KONDA list to list the packages currently installed. 48 99:59:59,999 --> 99:59:59,999 48 00:05:30,740 --> 00:05:34,750 We installed many Condah. So we're gonna need to install the additional packages we need. 49 99:59:59,999 --> 99:59:59,999 49 00:05:34,750 --> 00:05:39,830 Because it doesn't contain very much. So I'm going to go to the software installation instructions, 50 99:59:59,999 --> 99:59:59,999 50 00:05:39,830 --> 00:05:47,540 get the command from the mini to section and I'm going to paste it into my prompt and run it. 51 99:59:59,999 --> 99:59:59,999 51 00:05:47,540 --> 00:05:55,010 And this is going to install the scientific packages that we need to do the work for this class. 52 99:59:59,999 --> 99:59:59,999 52 00:05:55,010 --> 00:06:02,780 Yes, I want to proceed. I spend this up quite a bit in order to let it finish. 53 99:59:59,999 --> 99:59:59,999 53 00:06:02,780 --> 00:06:08,390 The video doesn't take forever. The long durations should only affect software installations. 54 99:59:59,999 --> 99:59:59,999 54 00:06:08,390 --> 00:06:12,770 They shouldn't affect our day to day use of Jupiter and notebooks. 55 99:59:59,999 --> 99:59:59,999 55 00:06:12,770 --> 00:06:19,720 I'm going to create a directory where I can work on C.S. 533 stuff. 56 99:59:59,999 --> 99:59:59,999 56 00:06:19,720 --> 00:06:26,140 Can start the Jupiter notebook's hanging around Jupiter notebook. No browser. 57 99:59:59,999 --> 99:59:59,999 57 00:06:26,140 --> 00:06:30,910 This is going to start up the notebook server and you see, it gives me this, you are al information. 58 99:59:59,999 --> 99:59:59,999 58 00:06:30,910 --> 00:06:36,130 And the key thing is I need that port. Number eight eight eight eight. So I can set up RSS H Tunnel. 59 99:59:59,999 --> 99:59:59,999 59 00:06:36,130 --> 00:06:42,120 I'm going to open another terminal. And I'm going to. 60 99:59:59,999 --> 99:59:59,999 60 00:06:42,120 --> 00:06:50,150 For what we call forward this port, so I want eight eight eight eight on my computer to forward to. 61 99:59:59,999 --> 99:59:59,999 61 00:06:50,150 --> 00:06:53,920 The computer at the other end and its port. Eight, eight, eight, eight. 62 99:59:59,999 --> 99:59:59,999 62 00:06:53,920 --> 00:06:59,530 And I'm going to connect to Onex Node zero three. Boise State. 63 99:59:59,999 --> 99:59:59,999 63 00:06:59,530 --> 00:07:07,500 And now that I have the tunnel setup, I can go to this, you are El. 64 99:59:59,999 --> 99:59:59,999 64 00:07:07,500 --> 00:07:18,150 Copy the URL. Go to what in my browser, and I'm now connected to the Jupiter notebook server running on Onex. 65 99:59:59,999 --> 99:59:59,999 65 00:07:18,150 --> 00:07:23,070 So if I are on my onyx node so I can you can see this, I can open a new terminal. 66 99:59:59,999 --> 99:59:59,999 66 00:07:23,070 --> 00:07:30,880 You can open terminals and Jupiter and it's on Onyx. It's all my honest snoad. 67 99:59:59,999 --> 99:59:59,999 67 00:07:30,880 --> 00:07:34,330 Close that terminal so I can either open an existing notebook. 68 99:59:59,999 --> 99:59:59,999 68 00:07:34,330 --> 00:07:42,850 I've got a couple lying around here from previous things. By clicking on them, you can use an SSA each file, transfer a client like SICP. 69 99:59:59,999 --> 99:59:59,999 69 00:07:42,850 --> 00:07:49,210 When SICP, Cyber Duqu or the one built into Intune will be X term in order to upload files. 70 99:59:59,999 --> 99:59:59,999 70 00:07:49,210 --> 00:07:56,590 I can also create a new a new notebook file, new Python three notebook here. 71 99:59:59,999 --> 99:59:59,999 71 00:07:56,590 --> 00:08:10,420 Import packages like pandas. And go about, say, completing the assignment so that when I'm done, so I can close and hold a notebook. 72 99:59:59,999 --> 99:59:59,999 72 00:08:10,420 --> 00:08:16,210 I can quit the entire Jupiter server either from the Web browser or by hitting control. 73 99:59:59,999 --> 99:59:59,999 73 00:08:16,210 --> 00:08:24,310 See in my terminal. So I'm going to quit the Jupiter server and I can close my terminal sessions. 74 99:59:59,999 --> 99:59:59,999 74 00:08:24,310 --> 00:08:34,900 So that's how you use and run Jupiter and Notebook's on Onyx notes. 75 99:59:59,999 --> 99:59:59,999